A Hypoxia Gene-Based Signature to Predict the Survival and Affect the Tumor Immune Microenvironment of Osteosarcoma in Children
Open Access
- 15 July 2021
- journal article
- research article
- Published by Wiley in Journal of Immunology Research
- Vol. 2021, 1-13
Abstract
Osteosarcoma is a quickly developing, malignant cancer of the bone, which is associated with a bad prognosis. In osteosarcoma, hypoxia promotes the malignant phenotype, which results in a cascade of immunosuppressive processes, poor prognosis, and a high risk of metastasis. Nonetheless, additional methodologies for the study of hyperoxia in the tumor microenvironment also need more analysis. We obtained 88 children patients with osteosarcoma from the Therapeutically Applicable Research to Generate Effective Treatment (TARGET) database and 53 children patients with RNA sequence and clinicopathological data from the Gene Expression Omnibus (GEO). We developed a four-gene signature related to hypoxia to reflect the immune microenvironment in osteosarcoma that predicts survival. A high-risk score indicated a poor prognosis and immunosuppressive microenvironment. The presence of the four-gene signature related to hypoxia was correlated with clinical and molecular features and was an important prognostic predictor for pediatric osteosarcoma patients. In summary, we established and validated a four-gene signature related to hypoxia to forecast recovery and presented an independent prognostic predictor representing overall immune response strength within the osteosarcoma microenvironment.Keywords
This publication has 47 references indexed in Scilit:
- Hypoxia: a key player in antitumor immune response. A Review in the Theme: Cellular Responses to HypoxiaAmerican Journal of Physiology-Cell Physiology, 2015
- Robust enumeration of cell subsets from tissue expression profilesNature Methods, 2015
- Oncology Meets Immunology: The Cancer-Immunity CycleImmunity, 2013
- An Immunosurveillance Mechanism Controls Cancer Cell PloidyScience, 2012
- Hypoxia activates the hedgehog signaling pathway in a ligand‐independent manner by upregulation of Smo transcription in pancreatic cancerCancer Science, 2011
- ABC transporters in cancer: more than just drug efflux pumpsNature Reviews Cancer, 2010
- Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profilesProceedings of the National Academy of Sciences, 2005
- Malignant bone tumors and limb-salvage surgery in childrenPediatric Radiology, 2004
- Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction NetworksGenome Research, 2003
- Activation of NK Cells and T Cells by NKG2D, a Receptor for Stress-Inducible MICAScience, 1999