Failure Tolerance of Motif Structure in Biological Networks
Authors:
Open Access
- 26 May 2011
- journal article
- research article
- Published by Public Library of Science (PLoS) in PLOS ONE
- Vol. 6 (5) , e20512
Abstract
Complex networks serve as generic models for many biological systems that have been shown to share a number of common structural properties such as power-law degree distribution and small-worldness. Real-world networks are composed of building blocks called motifs that are indeed specific subgraphs of (usually) small number of nodes. Network motifs are important in the functionality of complex networks, and the role of some motifs such as feed-forward loop in many biological networks has been heavily studied. On the other hand, many biological networks have shown some degrees of robustness in terms of their efficiency and connectedness against failures in their components. In this paper we investigated how random and systematic failures in the edges of biological networks influenced their motif structure. We considered two biological networks, namely, protein structure network and human brain functional network. Furthermore, we considered random failures as well as systematic failures based on different strategies for choosing candidate edges for removal. Failure in the edges tipping to high degree nodes had the most destructive role in the motif structure of the networks by decreasing their significance level, while removing edges that were connected to nodes with high values of betweenness centrality had the least effect on the significance profiles. In some cases, the latter caused increase in the significance levels of the motifs.Keywords
This publication has 54 references indexed in Scilit:
- Catastrophic cascade of failures in interdependent networksNature, 2010
- Diverse Two-Dimensional Input Functions Control Bacterial Sugar GenesMolecular Cell, 2008
- Autogenous and nonautogenous control of response in a genetic networkProceedings of the National Academy of Sciences, 2006
- Complex networks: Structure and dynamicsPhysics Reports, 2006
- Dynamic Properties of Network Motifs Contribute to Biological Network OrganizationPLOS Biology, 2005
- Motifs in Brain NetworksPLOS Biology, 2004
- Network biology: understanding the cell's functional organizationNature Reviews Genetics, 2004
- Global organization of metabolic fluxes in the bacterium Escherichia coliNature, 2004
- Network motifs in the transcriptional regulation network of Escherichia coliNature Genetics, 2002
- A comprehensive two-hybrid analysis to explore the yeast protein interactomeProceedings of the National Academy of Sciences, 2001