Analysis of full-length sequences of two Citrus yellow mosaic badnavirus isolates infecting Citrus jambhiri (Rough Lemon) and Citrus sinensis L. Osbeck (Sweet Orange) from a nursery in India
- 25 August 2012
- journal article
- research article
- Published by Springer Nature in Virus Genes
- Vol. 45 (3) , 600-605
Abstract
Citrus yellow mosaic badna virus (CMBV), a member of the Family Caulimoviridae, Genus Badnavirus is the causative agent of mosaic disease among Citrus species in southern India. Despite its reported prevalence in several citrus species, complete information on clear functional genomics or functional information of full-length genomes from all the CMBV isolates infecting citrus species are not available in publicly accessible databases. CMBV isolates from Rough Lemon and Sweet Orange collected from a nursery were cloned and sequenced. The analysis revealed high sequence homology of the two CMBV isolates with previously reported CMBV sequences implying that they represent new variants. Based on computational analysis of the predicted secondary structures, the possible functions of some CMBV proteins have been analyzed.Keywords
This publication has 13 references indexed in Scilit:
- Sequencing and computational analysis of complete genome sequences of Citrus yellow mosaic badna virus from acid lime and pummeloVirus Genes, 2009
- A comparison of four DNA extraction methods for the detection of Citrus yellow mosaic badna virus from two species of citrus using PCR and dot-blot hybridizationJournal of Virological Methods, 2008
- Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated MusaArchives of Virology, 2005
- FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties11Edited by B. HonigJournal of Molecular Biology, 2001
- A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetrovirusesJournal of General Virology, 1999
- A Short Basic Domain Supports a Nucleic Acid-Binding Activity in the Rice Tungro Bacilliform Virus Open Reading Frame 2 ProductVirology, 1997
- Alternative structures of the cauliflower mosaic virus 35 s RNA leader: implications for viral expression and replicationJournal of Molecular Biology, 1997
- The Open Reading Frame 2 Product of Cacao Swollen Shoot Badnavirus Is a Nucleic Acid-Binding ProteinVirology, 1996
- The ORF I and II Proteins ofCommelinaYellow Mottle Virus Are Virion-AssociatedVirology, 1996
- Association of a Badnavirus with Citrus Mosaic Disease in IndiaPlant Disease, 1996