Phylogenomics and historical biogeography of Hydrangeeae (Hydrangeaceae) elucidate the effects of geologic and climatic dynamics on diversification
- 26 July 2023
- journal article
- research article
- Published by The Royal Society in Proceedings Of The Royal Society B-Biological Sciences
- Vol. 290 (2003) , 20230659
Abstract
Demonstrating the process of transregional biogeography and mechanisms underlying evolutionary radiations is crucial to understanding biological evolution. Here, we use Hydrangeeae (Hydrangeaceae), a tribe with a unique disjunct distribution and complex trait variations, using a solid phylogenetic framework, to investigate how geographical and climatic factors interact with functional traits to trigger plant evolutionary radiations. We constructed the first highly supported and dated phylogenetic framework using 79 protein-coding genes obtained from 81 plastomes, representing 63 species and all major clades, and found that most extant species originated from asynchronous diversification of two lineages undergoing repeated expansion and retraction, at middle and high latitudes of the Northern Hemisphere between East Asia and North America, during the Eocene to Pleistocene (driven by geologic and climatic dynamics). In accordance with these drivers, interactions of flora between central-eastern China and Japan occurred frequently after the Late Tertiary. We found that resource limitation and range fragmentation probably accelerated the diversification of Hydrangeeae, which supports the resource-use hypothesis. Our study sheds light on the evolutionary radiation and assembly of flora within East Asia, and the East Asian–North American disjunction, through integration of phylogenomic and biogeographic data with functional trait and ecological data.Keywords
Funding Information
- National Natural Science Foundation of China (32071654)
This publication has 64 references indexed in Scilit:
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityMolecular Biology and Evolution, 2013
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell SequencingJournal of Computational Biology, 2012
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model SpaceSystematic Biology, 2012
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing DataPLOS ONE, 2012
- Unraveling Extensive Paraphyly in the Genus Hydrangea s. l. with Implications for the Systematics of Tribe HydrangeeaeSystematic Botany, 2010
- Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and CladogenesisSystematic Biology, 2008
- BEAST: Bayesian evolutionary analysis by sampling treesBMC Ecology and Evolution, 2007
- Timing the Eastern Asian–Eastern North American Floristic Disjunction: Molecular Clock Corroborates Paleontological EstimatesMolecular Phylogenetics and Evolution, 2000
- Mountains and Arid Climates of Middle LatitudesScience, 1990
- Opening mode of the Japan Sea inferred from the palaeomagnetism of the Japan ArcNature, 1985