Resolution ofab initioshapes determined from small-angle scattering
Open Access
- 27 October 2016
- journal article
- Published by International Union of Crystallography (IUCr) in IUCrJ
- Vol. 3 (6) , 440-447
Abstract
Spatial resolution is an important characteristic of structural models, and the authors of structures determined by X-ray crystallography or electron cryo-microscopy always provide the resolution upon publication and deposition. Small-angle scattering of X-rays or neutrons (SAS) has recently become a mainstream structural method providing the overall three-dimensional structures of proteins, nucleic acids and complexes in solution. However, no quantitative resolution measure is available for SAS-derived models, which significantly hampers their validation and further use. Here, a method is derived for resolution assessment forab initioshape reconstruction from scattering data. The inherent variability of theab initioshapes is utilized and it is demonstrated how their average Fourier shell correlation function is related to the model resolution. The method is validated against simulated data for proteins with known high-resolution structures and its efficiency is demonstrated in applications to experimental data. It is proposed that henceforth the resolution be reported in publications and depositions ofab initioSAS models.Keywords
This publication has 34 references indexed in Scilit:
- NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDBNucleic Acids Research, 2011
- Improving Protein Template Recognition by Using Small-Angle X-Ray Scattering ProfilesBiophysical Journal, 2011
- A New Generation of Crystallographic Validation Tools for the Protein Data BankStructure, 2011
- Resolution Measures in Molecular Electron Microscopy2010
- Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)Nature Methods, 2009
- DAMMIF, a program for rapidab-initioshape determination in small-angle scatteringJournal of Applied Crystallography, 2009
- SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographsNature Protocols, 2008
- Fourier shell correlation threshold criteriaJournal of Structural Biology, 2005
- Uniqueness of ab initio shape determination in small-angle scatteringJournal of Applied Crystallography, 2003
- CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic CoordinatesJournal of Applied Crystallography, 1995