Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures
Open Access
- 5 June 2014
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 30 (19) , 2808-2810
Abstract
Motivation: Interpretation and communication of genomic data require flexible and quantitative tools to analyze and visualize diverse data types, and yet, a comprehensive tool to display all common genomic data types in publication quality figures does not exist to date. To address this shortcoming, we present Sushi.R, an R/Bioconductor package that allows flexible integration of genomic visualizations into highly customizable, publication-ready, multi-panel figures from common genomic data formats including Browser Extensible Data (BED), bedGraph and Browser Extensible Data Paired-End (BEDPE). Sushi.R is open source and made publicly available through GitHub ( https://github.com/dphansti/Sushi ) and Bioconductor ( http://bioconductor.org/packages/release/bioc/html/Sushi.html ). Contact:mpsnyder@stanford.edu or dphansti@stanford.eduKeywords
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