DeepKinomeWeb: a quantitative, panel-level platform for kinase inhibitor screening and selectivity profiling

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Abstract
Protein kinases are central targets in drug discovery, yet early-stage development of potent and selective inhibitors remains challenging due to high experimental costs and limited interpretability of large-scale screening data. Here, we present DeepKinomeWeb, an integrated web-based platform that transforms competition-based high-throughput screening data into actionable insights for kinase inhibitor prioritization. Built upon our previously validated deep learning regression model, DeepKinome, the platform enables quantitative prediction of kinase–inhibitor binding affinities and provides panel-level visualization of selectivity landscapes, selectivity metric calculations, and integrated structural and physicochemical analyses. Through its user-friendly interface, DeepKinomeWeb supports rational, data-driven decision-making for biologists and medicinal chemists, lowering the barrier to systematic selectivity assessment in kinase inhibitor discovery. DeepKinomeWeb is freely available to all users without any login requirement at https://str.kribb.re.kr/deepkinome.
Funding Information
  • Korea Research Institute of Bioscience and Biotechnology (KGM5362111)
  • Korea Research Institute of Bioscience and Biotechnology (KGM1062511)
  • Korea Research Institute of Bioscience and Biotechnology (KGM1062511)
  • Ministry of Science and ICT, South Korea (RS-2025-16063949)
  • Ministry of Science and ICT, South Korea (RS-2024-00440009)

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