The assessment of three dimensional modelling design for single strand DNA aptamers for computational chemistry application
- 1 December 2020
- journal article
- research article
- Published by Elsevier in Biophysical Chemistry
- Vol. 267, 106492
Abstract
No abstract availableKeywords
Funding Information
- Fundamental Research Grant Scheme (FRGS15-208-0449)
This publication has 30 references indexed in Scilit:
- Characterization of Aptamer-Protein Complexes by X-ray Crystallography and Alternative ApproachesInternational Journal of Molecular Sciences, 2012
- Automated 3D structure composition for large RNAsNucleic Acids Research, 2012
- Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational EquilibriumJournal of Chemical Theory and Computation, 2011
- CHARMM Additive All-Atom Force Field for Carbohydrate Derivatives and Its Utility in Polysaccharide and Carbohydrate–Protein ModelingJournal of Chemical Theory and Computation, 2011
- Understanding the Sequence-Dependence of DNA Groove Dimensions: Implications for DNA InteractionsPLOS ONE, 2010
- The Vienna RNA WebsuiteNucleic Acids Research, 2008
- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular SimulationJournal of Chemical Theory and Computation, 2008
- Loop dependence of the stability and dynamics of nucleic acid hairpinsNucleic Acids Research, 2007
- Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of α/γ ConformersBiophysical Journal, 2007
- Comparison of multiple Amber force fields and development of improved protein backbone parametersProteins: Structure, Function, and Bioinformatics, 2006