Multidisciplinary genomic evaluation reveals adult inborn errors of immunity with rheumatic features
Authors:
- Hiroyuki BabaHBHiroyuki Baba
- Tadashi HosoyaTHTadashi Hosoya
- Taiki YamaguchiTYTaiki Yamaguchi
- Takuji ItakuraTITakuji Itakura
- Hirokazu SasakiHSHirokazu Sasaki
- Natsuka UmezawaNUNatsuka Umezawa
- Tetsuya SaitoTSTetsuya Saito
- Naoki KimuraNKNaoki Kimura
- Ryuji KoikeRKRyuji Koike
- Masayuki YoshidaMYMasayuki Yoshida
- Masaki ShimizuMSMasaki Shimizu
- Hirokazu KaneganeHKHirokazu Kanegane
Open Access
- 10 August 2026
- journal article
- Published by Rockefeller University Press in Journal of Human Immunity
- Vol. 2 (5)
Abstract
Multidisciplinary genomic evaluation is increasingly recognized for its diagnostic and therapeutic implications in adults with suspected inborn errors of immunity (IEI) presenting with rheumatic and musculoskeletal disease (RMD) phenotypes. We retrospectively analyzed 50 adults with suspected IEI who underwent genetic testing and were pre-classified into immunodeficiency (ID), autoinflammatory disorders (AID), and non-ID/AID groups. Genetic findings, clinical classification, treatment modifications, and exploratory machine learning analyses were evaluated. A final genetic diagnosis consistent with IEI was identified in 15 patients (30.0%), with the highest yield in the non-ID/AID group (44.4%). Variants were most frequently associated with autoinflammatory diseases (40.0%). Four patients, all initially classified as non-ID/AID, were reclassified based on genetic findings and IUIS classification. Treatment was modified in 12 patients, including eight genetically diagnosed patients and three genotype-driven interventions. Two patients died from disease-related complications. Machine learning analyses provided heterogeneous feature contributions across groups. These findings highlight the utility of multidisciplinary genomic evaluation for refining diagnoses in challenging adult patients.Keywords
This publication has 58 references indexed in Scilit:
- The Impact of Different MEFV Genotypes on Clinical Phenotype of Patients with Familial Mediterranean Fever: Special Emphasis on Joint InvolvementEuropean Journal of Pediatrics, 2024
- LightGBM is an Effective Predictive Model for Postoperative Complications in Gastric Cancer: A Study Integrating Radiomics with Ensemble LearningJournal of Imaging Informatics in Medicine, 2024
- Rheumatologic diseases in patients with inborn errors of immunity in the USIDNET registryClinical Rheumatology, 2022
- Autoantibodies against cytokines: phenocopies of primary immunodeficiencies?Human Genetics, 2020
- Interpretation of machine learning models using shapley values: application to compound potency and multi-target activity predictionsJournal of Computer-Aided Molecular Design, 2020
- Allogeneic hematopoietic cell transplantation in patients with GATA2 deficiency—a case report and comprehensive review of the literatureAnnals of Hematology, 2018
- Primary Immunodeficiency Diseases Worldwide: More Common than Generally ThoughtJournal of Clinical Immunology, 2012
- HLA class I deficiency syndrome mimicking Wegener's granulomatosisArthritis & Rheumatism, 2008
- A case of Muckle–Wells syndrome caused by a novel H312P mutation in NALP3 (cryopyrin)Modern Rheumatology, 2007
- Clinical and immunologic analyses of 103 patients with common variable immunodeficiencyJournal of Clinical Immunology, 1989