Hybridization-capture sequencing combined with iterative matrix reduction for SARS-CoV-2 variant estimation in wastewater genomic surveillance
Authors:
- Ryo HondaRHRyo Honda
- Hiroya KamoshidaHKHiroya Kamoshida
- Daisuke MotookaDaisuke Motooka
- Akihiko HataAkihiko Hata
- Rongxuan WangRWRongxuan Wang
- Takashi TamuraTTTakashi Tamura
- Satoshi EzakiSESatoshi Ezaki
- Tomoya BabaTBTomoya Baba
- Masanori AritaMAMasanori Arita
- 30 July 2026
- journal article
- Published by Elsevier in Journal of Environmental Chemical Engineering
- Vol. 14 (5)
Abstract
No abstract availableFunding Information
- Japan Agency for Medical Research and Development (JP24jm0210113h0001)
- Japan Science and Technology Agency (PMJPF2115)
- Japan Science and Technology Agency (JPMJCR20H1)
- Japan Society for the Promotion of Science (21KK0073)
- Program Manager Development and Promotion Program
This publication has 30 references indexed in Scilit:
- Optimization of a Semi-nested PCR Protocol for Amplifying the Entire Spike Protein Region to Identify SARS-CoV-2 Variants in WastewaterFood and Environmental Virology, 2026
- Wastewater surveillance in post-omicron silent phase uncovers silent waves and cryptic transmission of SARS-CoV-2 variants; a yearlong study in Western IndiaScience of The Total Environment, 2024
- Reduction of SARS-CoV-2 by biological nutrient removal and disinfection processes in full-scale wastewater treatment plantsScience of The Total Environment, 2023
- Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolutionScience of The Total Environment, 2023
- Identification of SARS-CoV-2 variants in wastewater using targeted amplicon sequencing during a low COVID-19 prevalence period in JapanScience of The Total Environment, 2023
- Application of a high-throughput quantitative PCR system for simultaneous monitoring of SARS-CoV-2 variants and other pathogenic viruses in wastewaterScience of The Total Environment, 2022
- Selection of surrogate viruses for process control in detection of SARS-CoV-2 in wastewaterScience of The Total Environment, 2022
- High throughput sequencing based direct detection of SARS-CoV-2 fragments in wastewater of Pune, West IndiaScience of The Total Environment, 2021
- Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillanceScience of The Total Environment, 2021
- Efficient detection of SARS-CoV-2 RNA in the solid fraction of wastewaterScience of The Total Environment, 2021