Crystallization and crystallographic analysis ofBacillus subtilisxylanase C
Authors:
- Franz J St JohnFranz J St John
- David K GodwinDGDavid K Godwin
- James F PrestonJPJames F Preston
- Edwin PozharskiEdwin Pozharski
- Jason C HurlbertJason C Hurlbert
- 24 April 2009
- journal article
- research article
- Published by International Union of Crystallography (IUCr) in Acta Crystallographica Section F Structural Biology and Crystallization Communications
- Vol. 65 (5) , 499-503
Abstract
The recent biochemical characterization of the xylanases of glycosyl hydrolase family 5 (GH 5) has identified a distinctive endo mode of action, hydrolyzing the -1,4 xylan chain at a specific site directed by the position of an -1,2-linked glucuronate moiety. Xylanase C (XynC), the GH 5 xylanase from Bacillus subtilis 168, has been cloned, overexpressed and crystallized. Initial data collection was performed and a preliminary model has been built into a low-quality 2.7 Å resolution density map. The crystals belonged to the primitive monoclinic space group P21. Further screening identified an additive that resulted in large reproducible crystals. This larger more robust crystal form belonged to space group P21212 and a resulting data set has been processed to 1.64 Å resolution. This will be the second structure to be solved from this unique xylanase family and the first from a Gram-positive bacterium. This work may help to identify the structural determinants that allow the exceptional specificity of this enzyme and the role it plays in the biological depolymerization and processing of glucuronoxylan.Keywords
This publication has 23 references indexed in Scilit:
- The role of bias in crystallization conditions in automated microseedingActa Crystallographica Section D Structural Biology, 2008
- Phasercrystallographic softwareJournal of Applied Crystallography, 2007
- An automated microseed matrix-screening method for protein crystallizationActa Crystallographica Section D Structural Biology, 2007
- Mode of action of glycoside hydrolase family 5 glucuronoxylan xylanohydrolase from Erwinia chrysanthemiThe FEBS Journal, 2007
- Characterization of XynC from Bacillus subtilis subsp. subtilis Strain 168 and Analysis of Its Role in Depolymerization of GlucuronoxylanJournal of Bacteriology, 2006
- Improved Prediction of Signal Peptides: SignalP 3.0Journal of Molecular Biology, 2004
- Functional Characterization of a Novel Xylanase from a Corn Strain of Erwinia chrysanthemiJournal of Bacteriology, 2001
- Updating the sequence-based classification of glycosyl hydrolasesBiochemical Journal, 1996
- Cloning and Characterization of a Xylanase Gene from Corn Strains ofErwinia chrysanthemiMolecular Plant-Microbe Interactions®, 1996
- Protein database searches for multiple alignments.Proceedings of the National Academy of Sciences, 1990