Regularized Estimation for the Accelerated Failure Time Model
- 28 May 2009
- journal article
- Published by Oxford University Press (OUP) in Biometrics
- Vol. 65 (2) , 394-404
Abstract
SummaryIn the presence of high‐dimensional predictors, it is challenging to develop reliable regression models that can be used to accurately predict future outcomes. Further complications arise when the outcome of interest is an event time, which is often not fully observed due to censoring. In this article, we develop robust prediction models for event time outcomes by regularizing the Gehan's estimator for the accelerated failure time (AFT) model (Tsiatis, 1996,Annals of Statistics18, 305–328) with least absolute shrinkage and selection operator (LASSO) penalty. Unlike existing methods based on the inverse probability weighting and the Buckley and James estimator (Buckley and James, 1979,Biometrika66, 429–436), the proposed approach does not require additional assumptions about the censoring and always yields a solution that is convergent. Furthermore, the proposed estimator leads to a stable regression model for prediction even if the AFT model fails to hold. To facilitate the adaptive selection of the tuning parameter, we detail an efficient numerical algorithm for obtaining the entire regularization path. The proposed procedures are applied to a breast cancer dataset to derive a reliable regression model for predicting patient survival based on a set of clinical prognostic factors and gene signatures. Finite sample performances of the procedures are evaluated through a simulation study.Keywords
This publication has 33 references indexed in Scilit:
- Adaptive Lasso for Cox's proportional hazards modelBiometrika, 2007
- The Adaptive Lasso and Its Oracle PropertiesJournal of the American Statistical Association, 2006
- Regularization and Variable Selection Via the Elastic NetJournal of the Royal Statistical Society Series B: Statistical Methodology, 2005
- Iterative Partial Least Squares with Right‐Censored Data Analysis: A Comparison to Other Dimension Reduction TechniquesBiometrics, 2005
- Rank-based inference for the accelerated failure time modelBiometrika, 2003
- A Gene-Expression Signature as a Predictor of Survival in Breast CancerNew England Journal of Medicine, 2002
- Estimation in a Linear Regression Model with Censored DataThe Annals of Statistics, 1990
- Estimating Regression Parameters Using Linear Rank Tests for Censored DataThe Annals of Statistics, 1990
- Ridge Regression: Biased Estimation for Nonorthogonal ProblemsTechnometrics, 1970
- Ridge Regression: Biased Estimation for Nonorthogonal ProblemsTechnometrics, 1970