Online citizen science with the Zooniverse for analysis of biological volumetric data
Preprint
- 6 March 2023
- preprint
- Published by Springer Nature in Research Square
Abstract
Public participation in research, also known as citizen science, is being increasingly adopted for the analysis of biological volumetric data. Researchers working in this domain are applying online citizen science as a scalable distributed data analysis approach, with recent research demonstrating that non-experts can productively contribute to tasks such as the segmentation of organelles in volume electron microscopy data. This, alongside the growing challenge to rapidly process the large amounts of biological volumetric data now routinely produced, means there is increasing interest within the research community to apply online citizen science for the analysis of data in this context. Here, we synthesise core methodological principles and practices for applying citizen science for analysis of biological volumetric data. We collate and share the knowledge and experience of multiple research teams who have applied online citizen science for the analysis of volumetric biological data using the Zooniverse platform (www.zooniverse.org). We hope this provides inspiration and practical guidance regarding how contributor effort via online citizen science may be usefully applied in this domain.Keywords
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This publication has 38 references indexed in Scilit:
- Instance segmentation of mitochondria in electron microscopy images with a generalist deep learning model trained on a diverse datasetCell Systems, 2023
- The BioImage Archive – Building a Home for Life-Sciences Microscopy DataJournal of Molecular Biology, 2022
- Detecting COVID-19 infection hotspots in England using large-scale self-reported data from a mobile application: a prospective, observational studyThe Lancet Public Health, 2021
- Exploring applications of crowdsourcing to cryo-EMJournal of Structural Biology, 2018
- The ImageJ ecosystem: An open platform for biomedical image analysisMolecular Reproduction and Development, 2015
- Space–time wiring specificity supports direction selectivity in the retinaNature, 2014
- Do-it-yourself biology: challenges and promises for an open science and technology movementSystems and Synthetic Biology, 2013
- Predicting protein structures with a multiplayer online gameNature, 2010
- Classification and 3D averaging with missing wedge correction in biological electron tomographyJournal of Structural Biology, 2008
- Array Tomography: A New Tool for Imaging the Molecular Architecture and Ultrastructure of Neural CircuitsNeuron, 2007