Application of Networking Approaches to Assess the Chemical Diversity, Biogeography, and Pharmaceutical Potential of Verongiida Natural Products
Open Access
- 18 October 2021
- journal article
- research article
- Published by MDPI AG in Marine Drugs
- Vol. 19 (10) , 582
Abstract
This study provides a review of all isolated natural products (NPs) reported for sponges within the order Verongiida (1960 to May 2020) and includes a comprehensive compilation of their geographic and physico-chemical parameters. Physico-chemical parameters were used in this study to infer pharmacokinetic properties as well as the potential pharmaceutical potential of NPs from this order of marine sponge. In addition, a network analysis for the NPs produced by the Verongiida sponges was applied to systematically explore the chemical space relationships between taxonomy, secondary metabolite and drug score variables, allowing for the identification of differences and correlations within a dataset. The use of scaffold networks as well as bipartite relationship networks provided a platform to explore chemical diversity as well as the use of chemical similarity networks to link pharmacokinetic properties with structural similarity. This study paves the way for future applications of network analysis procedures in the field of natural products for any order or family.Keywords
This publication has 172 references indexed in Scilit:
- Marine Pharmacology in 2009–2011: Marine Compounds with Antibacterial, Antidiabetic, Antifungal, Anti-Inflammatory, Antiprotozoal, Antituberculosis, and Antiviral Activities; Affecting the Immune and Nervous Systems, and other Miscellaneous Mechanisms of ActionMarine Drugs, 2013
- Brominated Skeletal Components of the Marine Demosponges, Aplysina cavernicola and Ianthella basta: Analytical and Biochemical InvestigationsMarine Drugs, 2013
- Subereamolline A as a Potent Breast Cancer Migration, Invasion and Proliferation Inhibitor and Bioactive Dibrominated Alkaloids from the Red Sea Sponge Pseudoceratina arabicaMarine Drugs, 2012
- Global Diversity of Sponges (Porifera)PLOS ONE, 2012
- Trends in the Discovery of New Marine Natural Products from Invertebrates over the Last Two Decades – Where and What Are We Bioprospecting?PLOS ONE, 2012
- High-throughput screening identification of poliovirus RNA-dependent RNA polymerase inhibitorsAntiviral Research, 2011
- Scaffold Diversity of Exemplified Medicinal Chemistry SpaceJournal of Chemical Information and Modeling, 2011
- Synthesis and SAR studies of 1,4-benzoxazine MenB inhibitors: Novel antibacterial agents against Mycobacterium tuberculosisBioorganic & Medicinal Chemistry Letters, 2010
- Highly Polar Spiroisoxazolines from the Sponge Aplysina fulvaJournal of Natural Products, 2007
- Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structuresOrganic & Biomolecular Chemistry, 2004