Integrating Venom Peptide Libraries Into a Phylogenetic and Broader Biological Framework
Authors:
Open Access
- 21 February 2022
- journal article
- research article
- Published by Frontiers Media SA in Frontiers in Molecular Biosciences
- Vol. 9, 784419
Abstract
The venomous marine snails are conventionally divided into three groups, the cone snails (family Conidae), the auger snails (family Terebridae) and the turrids (formerly all assigned to a single family, Turridae). In this study, a library of venom peptides from species conventionally assigned to the genus Turris was correlated to a phylogenetic analysis. Nucleotide sequences of multiple genes from transcriptomes were used to assess the phylogenetic relationships across a diverse set of species. The resulting tree shows that as conventionally defined, the conoidean genus Turris, is polyphyletic. We describe a new genus, Purpuraturris gen. nov., that comprises the outlier species. In addition to morphological distinctions, molecular data reveal that this group is divergent from Turris sensu stricto. The correlation between phylogenetic information and a family of peptide sequences was used to highlight those peptides mostly likely to be unique and intimately associated with biological diversity. The plethora of peptide sequences available requires two prioritization decisions: which subset of peptides to initially characterize, and after these are characterized, which to comprehensively investigate for potential biomedical applications such as drug developments.Life Science Identifiers: urn:lsid:zoobank.org; pub: 60D46561-28F0-4C39-BAC4-66DC8B4EAEA4Keywords
Funding Information
- National Institute of General Medical Sciences (P01GM048677 R01GM122869)
- U.S. Department of War (W81XWH-17-1-0413)
- Villum Fonden (19063)
This publication has 45 references indexed in Scilit:
- Ultrafast Approximation for Phylogenetic BootstrapMolecular Biology and Evolution, 2013
- ConoServer: updated content, knowledge, and discovery tools in the conopeptide databaseNucleic Acids Research, 2011
- Full-length transcriptome assembly from RNA-Seq data without a reference genomeNature Biotechnology, 2011
- Quality control and preprocessing of metagenomic datasetsBioinformatics, 2011
- Evolution of Conus Peptide Genes: Duplication and Positive Selection in the A-SuperfamilyJournal of Molecular Evolution, 2010
- Correlating Molecular Phylogeny with Venom Apparatus Occurrence in Panamic Auger Snails (Terebridae)PLOS ONE, 2009
- A rapidly diverging superfamily of peptide toxins in venomous Gemmula speciesToxicon, 2008
- RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics, 2006
- MAFFT version 5: improvement in accuracy of multiple sequence alignmentNucleic Acids Research, 2005
- Basic local alignment search toolJournal of Molecular Biology, 1990