Crystallization and Structural Determination of an Enzyme:Substrate Complex by Serial Crystallography in a Versatile Microfluidic Chip
Authors:
- 20 March 2021
- journal article
- research article
- Published by MyJove Corporation in Journal of Visualized Experiments
- No. 169,p. e61972
Abstract
The preparation of well diffracting crystals and their handling before their X-ray analysis are two critical steps of biocrystallographic studies. We describe a versatile microfluidic chip that enables the production of crystals by the efficient method of counter-diffusion. The convection-free environment provided by the microfluidic channels is ideal for crystal growth and useful to diffuse a substrate into the active site of the crystalline enzyme. Here we applied this approach to the CCA-adding enzyme of the psychrophilic bacterium Planococcus halocryophilus in the presented example. After crystallization and substrate diffusion/soaking, the crystal structure of the enzyme:substrate complex was determined at room temperature by serial crystallography and the analysis of multiple crystals directly inside the chip. The whole procedure preserves the genuine diffraction properties of the samples because it requires no crystal handling.Keywords
This publication has 18 references indexed in Scilit:
- Radiation damage and dose limits in serial synchrotron crystallography at cryo- and room temperaturesProceedings of the National Academy of Sciences, 2020
- Cold adaptation of tRNA nucleotidyltransferases: A tradeoff in activity, stability and fidelityRNA Biology, 2017
- ChipX: A Novel Microfluidic Chip for Counter-Diffusion Crystallization of Biomolecules and in Situ Crystal Analysis at Room TemperatureCrystal Growth & Design, 2013
- General methods2012
- tRNA nucleotidyltransferases: ancient catalysts with an unusual mechanism of polymerizationCellular and Molecular Life Sciences, 2010
- Counterdiffusion methods applied to protein crystallizationProgress in Biophysics and Molecular Biology, 2009
- Microfluidic chips for the crystallization of biomacromolecules by counter-diffusion and on-chip crystal X-ray analysisLab on a Chip, 2009
- 'Cool' crystals: macromolecular cryocrystallography and radiation damageCurrent Opinion in Structural Biology, 2003
- A supersaturation wave of protein crystallizationJournal of Crystal Growth, 2001
- Improved R-factors for diffraction data analysis in macromolecular crystallographyNature Structural & Molecular Biology, 1997