Rapid diagnosis of common, undetected, and uncultivable bloodstream infections from positive blood cultures using Oxford Nanopore sequencing: a metagenomic pipeline analysis

This publication has 35 references indexed in Scilit:

• Next-generation diagnostics of bloodstream infections enabled by rapid whole-genome sequencing of bacterial cells purified from blood cultures
  EBioMedicine, 2025
• Benchmarking of Nanopore R10.4 and R9.4.1 flow cells in single-cell whole-genome amplification and whole-genome shotgun sequencing
  Computational and Structural Biotechnology Journal, 2023
• Diagnostic Challenges in Sepsis
  Current Infectious Disease Reports, 2021
• Inappropriate empirical antibiotic therapy for bloodstream infections based on discordant in-vitro susceptibilities: a retrospective cohort analysis of prevalence, predictors, and mortality risk in US hospitals
  The Lancet Infectious Diseases, 2020
• Global, regional, and national sepsis incidence and mortality, 1990–2017: analysis for the Global Burden of Disease Study
  The Lancet, 2020
• Tackling antimicrobial resistance 2019–2024 – The UK's five-year national action plan
  Journal of Hospital Infection, 2019
• Surviving Sepsis Campaign: International Guidelines for Management of Sepsis and Septic Shock: 2016
  Intensive Care Medicine, 2017
• Gram-negative bacteraemia; a multi-centre prospective evaluation of empiric antibiotic therapy and outcome in English acute hospitals
  Clinical Microbiology and Infection, 2016
• Clinical and economic impact of antimicrobial stewardship interventions with the FilmArray blood culture identification panel
  Diagnostic Microbiology and Infectious Disease, 2016
• PCR-based diagnostics for infectious diseases: uses, limitations, and future applications in acute-care settings
  The Lancet Infectious Diseases, 2004