Lipid Profiles of Human Brain Tumors Obtained by High-Resolution Negative Mode Ambient Mass Spectrometry
Authors:
- Denis S. ZavorotnyukDenis S. Zavorotnyuk
- Stanislav I. PekovStanislav I. Pekov
- Anatoly A. SorokinAnatoly A. Sorokin
- Denis S. BormotovDenis S. Bormotov
- Nikita LevinNikita Levin
- Evgeny ZhvanskyEvgeny Zhvansky
- Savva SemenovSavva Semenov
- Polina StrelnikovaPolina Strelnikova
- Konstantin V. BocharovKonstantin V. Bocharov
- Alexander VorobievAlexander Vorobiev
- Alexey KononikhinAlexey Kononikhin
- Vsevolod ShurkhayVsevolod Shurkhay
Open Access
Abstract
Alterations in cell metabolism, including changes in lipid composition occurring during malignancy, are well characterized for various tumor types. However, a significant part of studies that deal with brain tumors have been performed using cell cultures and animal models. Here, we present a dataset of 124 high-resolution negative ionization mode lipid profiles of human brain tumors resected during neurosurgery. The dataset is supplemented with 38 non-tumor pathological brain tissue samples resected during elective surgery. The change in lipid composition alterations of brain tumors enables the possibility of discriminating between malignant and healthy tissues with the implementation of ambient mass spectrometry. On the other hand, the collection of clinical samples allows the comparison of the metabolism alteration patterns in animal models or in vitro models with natural tumor samples ex vivo. The presented dataset is intended to be a data sample for bioinformaticians to test various data analysis techniques with ambient mass spectrometry profiles, or to be a source of clinically relevant data for lipidomic research in oncology.Keywords
Funding Information
- Ministry of Science and Higher Education of the Russian Federation (0714-2020-0006)
This publication has 36 references indexed in Scilit:
- Metabolic pathways promoting cancer cell survival and growthNature Cell Biology, 2015
- Fatty Acids in Energy Metabolism of the Central Nervous SystemBioMed Research International, 2014
- Overexpression of fatty acid synthase in human gliomas correlates with the WHO tumor grade and inhibition with Orlistat reduces cell viability and triggers apoptosisJournal of Neuro-Oncology, 2014
- Cancer metabolism: fatty acid oxidation in the limelightNature Reviews Cancer, 2013
- MALDIquant: a versatile R package for the analysis of mass spectrometry dataBioinformatics, 2012
- Metabolic Reprogramming: A Cancer Hallmark Even Warburg Did Not AnticipateCancer Cell, 2012
- Processing and Analysis of GC/LC-MS-Based Metabolomics Data2010
- MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile dataBMC Bioinformatics, 2010
- Ambient imaging mass spectrometry by electrospray ionization using solid needle as sampling probeJournal of Mass Spectrometry, 2009
- Fatty acid synthase and the lipogenic phenotype in cancer pathogenesisNature Reviews Cancer, 2007