Molecular characterization ofMETfusions from a large real‐world Chinese population: A multicenter study
Open Access
- 16 June 2023
- journal article
- research article
- Published by Wiley in Cancer Medicine
- Vol. 12 (13) , 14015-14024
Abstract
Purpose: METis a notable driver gene in the diversity of aberrations with clinical relevance, including exon 14 skipping, copy number gain, point mutations, and gene fusions. Compared with the former two,METfusions are severely under‐reported, leaving a series of unanswered questions. In this study, we addressed this gap by characterizingMETfusions in a large, real‐world Chinese cancer population.Methods: We retrospectively included patients with solid tumors who had DNA‐based genome profiles acquired through targeted sequencing from August 2015 to May 2021.METfusion‐positive (MET+) patients were subsequently selected for clinical and molecular characterization.Results: We screened 79,803 patients across 27 tumor types and detected 155 putativeMETfusions from 122 patients, resulting in an overall prevalence of 0.15%. Lung cancer comprised the majority ofMET+ patients (92, 75.4%). Prevalence was markedly higher in liver cancer, biliary tract cancer, and renal cancer (range 0.52%–0.60%). It was lower in ovarian cancer (0.06%). A substantial proportion (48/58, 82.8%) of unique partners were reported for the first time. High heterogeneity was observed for partners, withST7,HLA‐DRB1, andKIF5Bas the three most common partners. Mutational landscape analysis of lung adenocarcinoma (n = 32) revealed a high prevalence ofTP53inMET+ alterations,EGFRL858R,EGFRL861Q, andMETamplification.Conclusion: To our knowledge, this is currently the largest study in characterizingMETfusions. Our findings warrant that further clinical validation and mechanistic study may translate into therapeutic avenues forMET+ cancer patients.Keywords
This publication has 44 references indexed in Scilit:
- FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolutionBioinformatics, 2014
- RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomasGenome Research, 2014
- Comprehensive molecular profiling of lung adenocarcinomaNature, 2014
- DIXDC1 increases the invasion and migration ability of non‐small‐cell lung cancer cells via the PI3K‐AKT/AP‐1 pathwayMolecular Carcinogenesis, 2013
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEffFly, 2012
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencingGenome Research, 2012
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing dataGenome Research, 2010
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing dataNucleic Acids Research, 2010
- Fast and accurate short read alignment with Burrows–Wheeler transformBioinformatics, 2009
- Molecular cloning of a new transforming gene from a chemically transformed human cell lineNature, 1984