Exact solution of the Bernoulli matching model of sequence alignment

Through a series of exact mappings we reinterprete the Bernoulli model of sequence alignment in terms of the discrete-time totally asymmetric exclusion process with backward sequential update and step function initial condition. Using earlier results from the Bethe ansatz we obtain the exact distribution of the length of the longest common subsequence of two sequences of finite lengths $X,Y$. Asymptotic analysis adapted from random theory allows us to derive the thermodynamic limit directly from the finite-size result.