Genetic analysis of a child with severe intellectual disability caused by a novel variant in the FERM domain of the FRMPD4 protein
Authors:
- 5 March 2024
- journal article
- research article
- Published by Springer Nature in Journal of Genetics
- Vol. 103 (1) , 1-7
Abstract
Intellectual developmental disorder, X-linked 104 (XLID104), caused by the FRMPD4 gene variant, is a rare X-linked genetic disease that primarily manifests as intellectual disability (ID) and language delay, and may be accompanied by behavioural abnormalities. Currently, only 11 patients from four families have been reported to carry FRMPD4 gene variants. Here, we report a rare case of a Chinese patient with XLID104 who was presented with severe ID and language impairment. Genetic testing results showed that the patient had a novel hemizygous variant on FRMPD4 inherited from the heterozygous variant NM_001368397: c.1772A>C (p.Glu591Ala) carried by his mother. To our knowledge, this variant has not been reported previously. Western blot results for the recombinant plasmid constructed in vitro indicated that the expression of the mutant protein may be reduced. Using molecular dynamics simulations, we predicted that the mutant protein may affect the interaction of the FRMPD4 protein with DLG4. In this study, we expand the spectrum of FRMPD4 variants and suggest that the clinical awareness of the genetic diagnosis of nonsyndromic ID should be strengthened.Keywords
This publication has 12 references indexed in Scilit:
- Overview of Specifications to the ACMG/AMP Variant Interpretation GuidelinesCurrent Protocols in Human Genetics, 2019
- FRMPD4 mutations cause X-linked intellectual disability and disrupt dendritic spine morphogenesisHuman Molecular Genetics, 2017
- Advances in understanding – genetic basis of intellectual disabilityF1000Research, 2016
- Systematic Phenomics Analysis Deconvolutes Genes Mutated in Intellectual Disability into Biologically Coherent ModulesThe American Journal of Human Genetics, 2016
- Genetic studies in intellectual disability and related disordersNature Reviews Genetics, 2015
- Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular PathologyGenetics in Medicine, 2015
- X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genesMolecular Psychiatry, 2015
- Diagnostic Exome Sequencing in Persons with Severe Intellectual DisabilityNew England Journal of Medicine, 2012
- Preso1 dynamically regulates group I metabotropic glutamate receptorsNature Neuroscience, 2012
- Preso, A Novel PSD-95-Interacting FERM and PDZ Domain Protein That Regulates Dendritic Spine MorphogenesisThe Journal of Neuroscience, 2008