The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae)
Open Access
- 10 January 2025
- journal article
- research article
- Published by Wiley in Ecology and Evolution
- Vol. 15 (1) , e70838
Abstract
Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this study, the complete chloroplast genome of E. variegata was sequenced and characterized using Illumina sequencing platform. The chloroplast genome of E. variegata was 152,351 bp in length and consisted of a large single copy (82,907 bp), a small single copy (26,309 bp), and two inverted repeat regions (16,826 bp). There were 79 protein‐coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Comparative analysis revealed high conservation of chloroplast genomes among Erythrina species regarding genome size, structure, and gene content. The phylogenetic study also indicated a close relationship between E. variagata and E. sanwicensis. This study provides initial plastome data for further genomic studies examining E. variegata and related species in Fabaceae.Keywords
This publication has 29 references indexed in Scilit:
- Molecular markers from the chloroplast genome of rose provide a complementary tool for variety discrimination and profilingScientific Reports, 2020
- New Insights Into the Plastome Evolution of the Millettioid/Phaseoloid Clade (Papilionoideae, Leguminosae)Frontiers in Plant Science, 2020
- IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic EraMolecular Biology and Evolution, 2020
- In vitro cytotoxic and antimicrobial activities of Erythrina suberosa (Roxb) barkJournal of Pharmacy and Bioallied Sciences, 2020
- OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomesNucleic Acids Research, 2019
- fastp: an ultra-fast all-in-one FASTQ preprocessorBioinformatics, 2018
- Plastid phylogenomic analysis of green plants: A billion years of evolutionary historyAmerican Journal of Botany, 2018
- GeSeq – versatile and accurate annotation of organelle genomesNucleic Acids Research, 2017
- Chloroplast genomes: diversity, evolution, and applications in genetic engineeringGenome Biology, 2016
- Chloroplasts: state of research and practical applications of plastome sequencingPlanta, 2016