Metagenomic analyses of the late Pleistocene permafrost – additional tools for reconstruction of environmental conditions
Open Access
- 15 April 2016
- journal article
- research article
- Published by Copernicus GmbH in Biogeosciences
- Vol. 13 (7) , 2207-2219
Abstract
A comparative analysis of the metagenomes from two 30 000-year-old permafrost samples, one of lake-alluvial origin and the other from late Pleistocene Ice Complex sediments, revealed significant differences within microbial communities. The late Pleistocene Ice Complex sediments (which have been characterized by the absence of methane with lower values of redox potential and Fe2+ content) showed a low abundance of methanogenic archaea and enzymes from both the carbon and nitrogen cycles, but a higher abundance of enzymes associated with the sulfur cycle. The metagenomic and geochemical analyses described in the paper provide evidence that the formation of the sampled late Pleistocene Ice Complex sediments likely took place under much more aerobic conditions than lake-alluvial sediments.Keywords
All Related Versions
Funding Information
- National Science Foundation (DEB-1442262)
This publication has 55 references indexed in Scilit:
- Cross-biome metagenomic analyses of soil microbial communities and their functional attributesProceedings of the National Academy of Sciences, 2012
- The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated toolsBMC Bioinformatics, 2012
- Microbes in thawing permafrost: the unknown variable in the climate change equationThe ISME Journal, 2011
- The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major BiomesPLOS Computational Biology, 2009
- Phylogenetic Diversity and Metabolic Potential Revealed in a Glacier Ice MetagenomeApplied and Environmental Microbiology, 2009
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomesBMC Bioinformatics, 2008
- Stress response of methanogenic archaea from Siberian permafrost compared with methanogens from nonpermafrost habitatsFEMS Microbiology Ecology, 2007
- Psychrophilic microorganisms: challenges for lifeEMBO Reports, 2006
- Statistical significance for genomewide studiesProceedings of the National Academy of Sciences, 2003
- KEGG: Kyoto Encyclopedia of Genes and GenomesNucleic Acids Research, 2000