Disruption of OVOL2 Distal Regulatory Elements as a Possible Mechanism Implicated in Corneal Endothelial Dystrophy
Authors:
- Lubica DudakovaLDLubica Dudakova
- Lenka NoskovaLNLenka Noskova
- Stanislav KmochSKStanislav Kmoch
- Alice E. DavidsonADAlice E. Davidson
- Vasileios ToulisVTVasileios Toulis
- Jana JedlickovaJJJana Jedlickova
- Pavlina SkalickaPSPavlina Skalicka
- Hana HartmannovaHHHana Hartmannova
- Viktor StraneckyVSViktor Stranecky
- Jana DrabovaJDJana Drabova
Open Access
- 4 January 2024
- journal article
- research article
- Published by Hindawi Limited in Human Mutation
- Vol. 2024, 1-10
Abstract
The genetic architecture of corneal endothelial dystrophies remains unknown in a substantial number of affected individuals. The proband investigated in the current study was diagnosed in the neonatal period with bilateral corneal opacification due to primary endothelial cell dysfunction. Neither his parents nor his sister had signs of corneal disease. Conventional karyotyping revealed a de novo translocation involving chromosomes 3 and 20, t(3;20)(q25;p11-12). Following genome and targeted Sanger sequencing analysis, the breakpoints were mapped at the nucleotide level. Notably, the breakpoint on chromosome 20 was identified to lie within the same topologically associated domain (TAD) as corneal endothelial dystrophy-associated gene OVOL2, and it is predicted to disrupt distal enhancers. The breakpoint at chromosome 3 is located within intron 2 of PFN2, which is currently not associated with any human disease. Further interrogation of the probands genome failed to identify any additional potentially pathogenic variants in corneal endothelial dystrophy-associated genes. Disruption of a candidate cis-regulatory element and/or positional effects induced by translocation of OVOL2 to a novel genomic context may lead to an aberrant OVOL2 expression, a previously characterized disease mechanism of corneal endothelial dystrophy. Further research is necessary to explore how disruption of regulatory elements may elucidate genetically unsolved corneal endothelial dystrophies.Keywords
Funding Information
- National Center for Medical Genomics (LM2023067)
This publication has 49 references indexed in Scilit:
- An integrated encyclopedia of DNA elements in the human genomeNature, 2012
- DELLY: structural variant discovery by integrated paired-end and split-read analysisBioinformatics, 2012
- A conserved regulatory element located far downstream of the gls locus modulates gls expression through chromatin loop formation during myogenesisFEBS Letters, 2012
- Topological domains in mammalian genomes identified by analysis of chromatin interactionsNature, 2012
- Integrative genomics viewerNature Biotechnology, 2011
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing dataGenome Research, 2010
- Absence of Phenotype-Genotype Correlation of Patients Expressing Mutations in the SLC4A11 GeneCornea, 2010
- A New, X-linked Endothelial Corneal DystrophyAmerican Journal of Ophthalmology, 2006
- Clinicopathological correlation of congenital corneal opacification using ultrasound biomicroscopyBritish Journal of Ophthalmology, 2002
- Congenital hereditary corneal oedema of Maumenee: its clinical features, management, and pathology.British Journal of Ophthalmology, 1987