The complete mitochondrial genome of Poraniopsis inflata (Asteroidea: Valvatida: Poraniidae) from Dokdo Island, Korea
Open Access
- 19 February 2024
- journal article
- research article
- Published by Taylor & Francis in Mitochondrial DNA Part B
- Vol. 9 (2) , 290-294
Abstract
This study presents the complete mitochondrial genome sequence of Poraniopsis inflata, providing valuable information on its genetic and taxonomic studies. Through next-generation sequencing, we successfully obtained the complete mitogenome of P. inflata, spanning a length of 16,322 bp. This genome structure encompasses 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. The phylogenetic analysis, based on a dataset of 13 PCG sequences, illuminated the phylogenetic relationships of P. inflata with other species of class Asteroidea and a species of echinoderm classes. The maximum likelihood phylogenetic tree showed that P. inflata closely clustered with Linckia laevigata. By revealing its mitochondrial genome and positioning it within the Asteroidea lineage, this study provides insights into the phylogenetic context of P. inflata.Keywords
Funding Information
- Ministry of Education, Republic of Korea (2021R1I1A205801)
This publication has 9 references indexed in Scilit:
- Mitogenomics provides new insights into the phylogenetic relationships and evolutionary history of deep-sea sea stars (Asteroidea)Scientific Reports, 2022
- Complete mitochondrial genome analysis of Aquilonastra batheri (Echinodermata, Asteroidea, Valvatida)Mitochondrial DNA Part B, 2018
- tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genesNucleic Acids Research, 2016
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics, 2014
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityMolecular Biology and Evolution, 2013
- jModelTest 2: more models, new heuristics and parallel computingNature Methods, 2012
- Between Two Extremes: Mitochondrial DNA is neither the Panacea nor the Nemesis of Phylogenetic and Taxonomic InferenceSystematic Biology, 2005
- A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodSystematic Biology, 2003
- Animal mitochondrial genomesNucleic Acids Research, 1999