Biochemistry of fluoroprolines: the prospect of making fluorine a bioelement
Open Access
- 15 February 2021
- journal article
- review article
- Published by Beilstein Institut in Beilstein Journal of Organic Chemistry
- Vol. 17 (1) , 439-460
Abstract
Due to the heterocyclic structure and distinct conformational profile, proline is unique in the repertoire of the 20 amino acids coded into proteins. Here, we summarize the biochemical work on the replacement of proline with (4R)- and (4S)-fluoroproline as well as 4,4-difluoroproline in proteins done mainly in the last two decades. We first recapitulate the complex position and biochemical fate of proline in the biochemistry of a cell, discuss the physicochemical properties of fluoroprolines, and overview the attempts to use these amino acids as proline replacements in studies of protein production and folding. Fluorinated proline replacements are able to elevate the protein expression speed and yields and improve the thermodynamic and kinetic folding profiles of individual proteins. In this context, fluoroprolines can be viewed as useful tools in the biotechnological toolbox. As a prospect, we envision that proteome-wide proline-to-fluoroproline substitutions could be possible. We suggest a hypothetical scenario for the use of laboratory evolutionary methods with fluoroprolines as a suitable vehicle to introduce fluorine into living cells. This approach may enable creation of synthetic cells endowed with artificial biodiversity, containing fluorine as a bioelement.Keywords
This publication has 156 references indexed in Scilit:
- Substrate Specificity of Bacterial Prolyl-tRNA Synthetase Editing Domain Is Controlled by a Tunable Hydrophobic PocketJournal of Biological Chemistry, 2012
- Chemical Scale Studies of the Phe-Pro Conserved Motif in the Cys Loop of Cys Loop ReceptorsJournal of Biological Chemistry, 2010
- Stereoelectronic and steric effects in side chains preorganize a protein main chainProceedings of the National Academy of Sciences, 2009
- Origin of the stability conferred upon collagen by fluorinationBioorganic & Medicinal Chemistry Letters, 2009
- Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coliNature Chemical Biology, 2009
- Increasing protein stability by improving beta‐turnsProteins: Structure, Function, and Bioinformatics, 2009
- The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteinsNature Structural & Molecular Biology, 2009
- Collagen Structure and StabilityAnnual Review of Biochemistry, 2009
- Synthetic Biology of Proteins: Tuning GFPs Folding and Stability with FluoroprolinePLOS ONE, 2008
- Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectorsGene, 1985