Molecular basis of differential adventitious rooting competence in poplar genotypes
Preprint
Abstract
Recalcitrant adventitious root (AR) development is a major hurdle in propagating commercially important woody plants. Although significant progress has been made to identify genes involved in subsequent steps of AR development, the molecular basis of differences in apparent recalcitrance to form AR between easy-to-root and difficult-to-root genotypes remains unknown. To address this, we generated cambium tissue-specific transcriptomic data from stem cuttings of hybrid aspen, T89 (difficult-to-root) and hybrid poplar OP42 (easy-to-root) and used transgenic approaches to verify the role of several transcription factors (TF) in the control of adventitious rooting. Increased peroxidase activity is positively correlated with better rooting. We found differentially expressed genes encoding Reactive Oxygen Species (ROS) scavenging proteins to be enriched in OP42 compared to T89. A higher number of differentially expressed TF in OP42 compared to T89 cambium cells was revealed by a more intense transcriptional reprograming in the former. PtMYC2 , a potential negative regulator, was less expressed in OP42 compared to T89. Using transgenic approaches, we have demonstrated that PttARF17.1 and PttMYC2.1 negatively regulate adventitious rooting. Our results provide insights into the molecular basis of genotypic differences in AR and implicate differential expression of the master regulator MYC2 as a critical player in this process.Keywords
All Related Versions
- Published version: Journal of Experimental Botany, 73 (12), 4046.
This publication has 65 references indexed in Scilit:
- STAR: ultrafast universal RNA-seq alignerBioinformatics, 2012
- Auxin Controls Arabidopsis Adventitious Root Initiation by Regulating Jasmonic Acid HomeostasisThe Plant Cell, 2012
- Short Day–Mediated Cessation of Growth Requires the Downregulation of AINTEGUMENTALIKE1 Transcription Factor in Hybrid AspenPLOS Genetics, 2011
- Monitoring the regulation of gene expression in a growing organ using a fluid mechanics formalismBMC Biology, 2010
- Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA AbundanceThe Plant Cell, 2009
- The Cytokinin Type-B Response Regulator PtRR13 Is a Negative Regulator of Adventitious Root Development inPopulusPlant Physiology, 2009
- Gibberellins Regulate Lateral Root Formation inPopulusthrough Interactions with Auxin and Other HormonesThe Plant Cell, 2009
- Genes of the most conserved WOX clade in plants affect root and flower development in ArabidopsisBMC Ecology and Evolution, 2008
- The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription‐polymerase chain reaction (RT‐PCR) analysis in plantsPlant Biotechnology Journal, 2008
- Climate change impacts on forestryProceedings of the National Academy of Sciences, 2007