The need to implement FAIR principles in biomolecular simulations
Authors:
- Rommie AmaroRARommie Amaro
- Johan ÅqvistJÅJohan Åqvist
- Ivet BaharIBIvet Bahar
- Federica BattistiniFBFederica Battistini
- Adam BellaicheABAdam Bellaiche
- Daniel BeltranDBDaniel Beltran
- Philip C. BigginPBPhilip C. Biggin
- Massimiliano BonomiMBMassimiliano Bonomi
- Gregory R. BowmanGBGregory R. Bowman
- Richard BryceRBRichard Bryce
- Giovanni BussiGBGiovanni Bussi
- Paolo CarloniPCPaolo Carloni
Preprint
Abstract
This letter illustrates the opinion of the molecular dynamics (MD) community on the need to adopt a new FAIR paradigm for the use of molecular simulations. It highlights the necessity of a collaborative effort to create, establish, and sustain a database that allows findability, accessibility, interoperability, and reusability of molecular dynamics simulation data. Such a development would democratize the field and significantly improve the impact of MD simulations on life science research. This will transform our working paradigm, pushing the field to a new frontier. We invite you to support our initiative at the MDDB community (https://mddbr.eu/community/)Keywords
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This publication has 18 references indexed in Scilit:
- AI and the democratization of knowledgeScientific Data, 2024
- Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?Biophysical Reviews, 2021
- A white-knuckle ride of open COVID drug discoveryNature, 2021
- COVID19 - Computational Chemists Meet the MomentJournal of Chemical Information and Modeling, 2020
- A Community Letter Regarding Sharing Biomolecular Simulation Data for COVID-19Journal of Chemical Information and Modeling, 2020
- Surviving the deluge of biosimulation dataWIREs Computational Molecular Science, 2019
- Sharing Data from Molecular SimulationsJournal of Chemical Information and Modeling, 2019
- A Kepler Workflow Tool for Reproducible AMBER GPU Molecular DynamicsBiophysical Journal, 2017
- The FAIR Guiding Principles for scientific data management and stewardshipScientific Data, 2016
- Dynamics of folded proteinsNature, 1977