Recent advances in modeling languages for pathway maps and computable biological networks

This publication has 32 references indexed in Scilit:

• Programming biological models in Python using PySB
  Molecular Systems Biology, 2013
• The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways
  Bioinformatics, 2011
• Systems biology beyond networks: Generating order from disorder through self-organization
  Seminars in Cancer Biology, 2011
• The BioPAX community standard for pathway data sharing
  Nature Biotechnology, 2010
• The Systems Biology Graphical Notation
  Nature Biotechnology, 2009
• ProMoT: modular modeling for systems biology
  Bioinformatics, 2009
• Rule-Based Modelling of Cellular Signalling
  2007
• Entrez Gene: gene-centered information at NCBI
  Nucleic Acids Research, 2006
• Pathway information for systems biology
  FEBS Letters, 2005
• The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
  Bioinformatics, 2003