Assessment of protein model structure accuracy estimation in CASP14: Old and new challenges
- 5 August 2021
- journal article
- research article
- Published by Wiley in Proteins: Structure, Function, and Bioinformatics
- Vol. 89 (12) , 1940-1948
Abstract
In CASP, blind testing of model accuracy estimation methods has been conducted on models submitted by tertiary structure prediction servers. In CASP14, model accuracy estimation results were evaluated in terms of both global and local structure accuracy, as in the previous CASPs. Unlike the previous CASPs that did not show pronounced improvements in performance, the best single‐model method (from the Baker group) showed an improved performance in CASP14, particularly in evaluating global structure accuracy when compared to both the best single‐model methods in previous CASPs and the best multi‐model methods in the current CASP. Although the CASP14 experiment on model accuracy estimation did not deal with the structures generated by AlphaFold2, new challenges that have arisen due to the success of AlphaFold2 are discussed.Keywords
Funding Information
- National Institute of General Medical Sciences (R01GM100482)
- National Research Foundation of Korea (2019M3E5D4066898, 2020M3A9G7103933)
This publication has 19 references indexed in Scilit:
- Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11Proteins: Structure, Function, and Bioinformatics, 2015
- The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexesNucleic Acids Research, 2014
- CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLLProteins: Structure, Function, and Bioinformatics, 2013
- lDDT: a local superposition-free score for comparing protein structures and models using distance difference testsBioinformatics, 2013
- Assessment of the assessment: Evaluation of the model quality estimates in CASP10Proteins: Structure, Function, and Bioinformatics, 2013
- CAD‐score: A new contact area difference‐based function for evaluation of protein structural modelsProteins: Structure, Function, and Bioinformatics, 2012
- GOAP: A Generalized Orientation-Dependent, All-Atom Statistical Potential for Protein Structure PredictionBiophysical Journal, 2011
- Evaluation of model quality predictions in CASP9Proteins: Structure, Function, and Bioinformatics, 2011
- Evaluation of CASP8 model quality predictionsProteins: Structure, Function, and Bioinformatics, 2009
- Assessment of predictions in the model quality assessment categoryProteins: Structure, Function, and Bioinformatics, 2007