Electron Attachment to the Nucleobase Uracil in Diethylene Glycol: The Signature of a Doorway
- 30 October 2024
- journal article
- research article
- Published by Wiley in Chemphyschem
- Vol. 25 (24) , e202400581
Abstract
The cellular environment plays a significant role in low energy electron‐mediated radiation damage to genetic materials. In this study, we have modeled the effect of the bulk medium on electron attachment to nucleobases in diethylene glycol (DEG) using uracil as a test case, in accordance with recent experimental work on the observation of dissociative quasi‐free electron attachment to nucleoside via excited anion radical in solution (in DEG). Our EOM‐CCSD‐based quantum mechanical/molecular mechanical (QM/MM) simulations indicate that the electron scavenging by uracil in DEG is much slower than that observed in the aqueous medium due to its viscosity. This work also establishes that a doorway mechanism exists in uracil microsolvated and bulk solvated with DEG, with the dipole‐bound state and solvent‐bound state acting as doorway states, respectively.Keywords
Funding Information
- Indian Space Research Organisation (RD/0122-ISROC00-004)
- National Science Foundation (CHE-1920110)
This publication has 83 references indexed in Scilit:
- Interactions of Solvated Electrons with Nucleobases: The Effect of Base PairingChemphyschem, 2020
- Software update: the ORCA program system, version 4.0WIREs Computational Molecular Science, 2017
- Electron Spin Resonance of Radicals in Irradiated DNA2014
- Photoelectron spectroscopy of hydrated electronsChemical Physics Letters, 2010
- Role of Excited States in Low‐Energy Electron (LEE) Induced Strand Breaks in DNA Model Systems: Influence of Aqueous EnvironmentChemphyschem, 2009
- Free-Radical-Induced DNA Damage and Its Repair2006
- Scalable molecular dynamics with NAMDJournal of Computational Chemistry, 2005
- Lehninger: principles of biochemistry (4th edn) D. L. Nelson and M. C. Cox, W. H. Freeman & Co., New York, 1119 pp (plus 17 pp glossary), ISBN 0‐7167‐4339‐6 (2004)Cell Biochemistry and Function, 2005
- Thymine excision from DNA by subexcitation electronsChemical Physics Letters, 2004
- Multimode Molecular Dynamics Beyond the Born‐Oppenheimer Approximation1984