Overexpression of a modified eIF4E regulates potato virus Y resistance at the transcriptional level in potato
Open Access
- 6 January 2020
- journal article
- research article
- Published by Springer Nature in BMC Genomics
- Vol. 21 (1) , 1-16
Abstract
Background: Potato virus Y (PVY) is a major pathogen of potatoes with major impact on global agricultural production. Resistance to PVY can be achieved by engineering potatoes to express a recessive, resistant allele of eukaryotic translation initiation factor eIF4E, a host dependency factor essential to PVY replication. Here we analyzed transcriptome changes in eIF4E over-expressing potatoes to shed light on the mechanism underpinning eIF4E-mediated recessive PVY resistance. Results: As anticipated, modified eIF4E-expressing potatoes demonstrated a high level of resistance, eIF4E expression, and an unexpected suppression of the susceptible allele transcript, likely explaining the bulk of the potent antiviral phenotype. In resistant plants, we also detected marked upregulation of genes involved in cell stress responses. Conclusions: Our results reveal a previously unanticipated second layer of signaling attributable to eIF4E regulatory control, and potentially relevant to establishment of a broader, more systematic antiviral host defense.Keywords
Funding Information
- USDA Agricultural Research Service (58-5090-5-056)
- Hatch Formula Act (MSN 179998)
This publication has 51 references indexed in Scilit:
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and explorationBriefings in Bioinformatics, 2012
- Fast gapped-read alignment with Bowtie 2Nature Methods, 2012
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeBMC Bioinformatics, 2011
- The variant call format and VCFtoolsBioinformatics, 2011
- A scaling normalization method for differential expression analysis of RNA-seq dataGenome Biology, 2010
- The mechanism of eukaryotic translation initiation and principles of its regulationNature Reviews Molecular Cell Biology, 2010
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics, 2009
- Functional Dissection of Naturally Occurring Amino Acid Substitutions in eIF4E That Confers Recessive Potyvirus Resistance in PlantsThe Plant Cell, 2007
- The plant immune systemNature, 2006
- Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol componentsPlant Molecular Biology Reporter, 1997