Characterization of the clade 4 non-toxigenic C. difficile isolate L-NTCD03 carrying the cfr(B) gene
Preprint
Abstract
Clostridioides difficile infection (CDI) is a toxin-mediated gastro-intestinal disease. Yet, C. difficile is a phylogenetically diverse species that includes many non-toxigenic strains. In general, these are understudied, despite having significant potential impact for our understanding of the colonization process and as therapeutic modalities. Here, we present an in-depth characterization - including the complete genome sequence - of the non-toxigenic C. difficile strain L-NTCD03. This strain belongs to PCR ribotype 416, clade 4 and multilocus sequence type 39. It is resistant to multiple antimicrobials, but not those used for treatment of CDI. We validate the relevance of the cfr(B) gene from this strain in antimicrobial resistance. We find the L-NTCD03 strain to be non-toxic in various assays. Altogether, L-NTCD03 is a promising candidate for developing into a live biotherapeutic product.Keywords
All Related Versions
- Published version: FEMS Microbes, 7.
Funding Information
- FEMS (FEMSO-GO-2021-042)
This publication has 64 references indexed in Scilit:
- Antimicrobial susceptibility testing of Clostridioides difficile: a dual-site study of three different media and three therapeutic antimicrobialsClinical Microbiology and Infection, 2025
- Carriage of three plasmids in a single human clinical isolate of Clostridioides difficilePlasmid, 2022
- Clostridioides difficile infection with isolates of cryptic clade C-II: a genomic analysis of polymerase chain reaction ribotype 151Clinical Microbiology and Infection, 2022
- BUSCO: Assessing Genomic Data Quality and BeyondCurrent Protocols, 2021
- Genomic basis of antimicrobial resistance in non-toxigenic Clostridium difficile in Southeast AsiaAnaerobe, 2020
- High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolatesInternational Journal of Medical Microbiology, 2017
- A clinical and epidemiological review of non-toxigenic Clostridium difficileAnaerobe, 2013
- Comparative analysis of an expanded Clostridium difficile reference strain collection reveals genetic diversity and evolution through six lineagesInfection, Genetics and Evolution, 2012
- A computer-controlled system to simulate conditions of the large intestine with peristaltic mixing, water absorption and absorption of fermentation productsApplied Microbiology and Biotechnology, 1999
- Nucleotide sequence of the Staphylococcus aureus transposon, Tn5405, carrying aminoglycosides resistance genesJournal of Basic Microbiology, 1997