Genome-wide prediction of transcription factor binding sites using an integrated model
Open Access
- 22 January 2010
- journal article
- method
- Published by Springer Nature in Genome Biology
- Vol. 11 (1) , 1-17
Abstract
We present an integrated method called Chromia for the genome-wide identification of functional target loci of transcription factors. Designed to capture the characteristic patterns of transcription factor binding motif occurrences and the histone profiles associated with regulatory elements such as promoters and enhancers, Chromia significantly outperforms other methods in the identification of 13 transcription factor binding sites in mouse embryonic stem cells, evaluated by both binding (ChIP-seq) and functional (RNA interference knockdown) experiments.Keywords
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