gRaphiaExtra: An R Package for Integrating 'Seurat' Objects into 'gRaphia'
- 18 September 2026
- dataset
- Published by The R Foundation
Abstract
Utilising graph-based network analysis frameworks, 'Graphia' is a powerful open source visual analytics application developed to aid the interpretation of large and complex datasets. For more details, see article by Freeman et al. (2022) . 'gRaphia' is an extension of the 'Graphia' application within the R environment, providing tools for network analysis and visualisation. 'gRaphiaExtra' provides additional functionality specifically designed for single-cell RNA-sequencing data, enabling users to seamlessly integrate and utilise existing 'Seurat' analysis outputs in 'gRaphia'. The package also provides supplementary functions to support and enhance the 'gRaphia' analysis framework.Keywords
This publication has 1 reference indexed in Scilit:
- Graphia: A platform for the graph-based visualisation and analysis of high dimensional dataPLOS Computational Biology, 2022