A Bootstrap Framework for Aggregating within and between Feature Selection Methods
Open Access
Abstract
In the past decade, big data has become increasingly prevalent in a large number of applications. As a result, datasets suffering from noise and redundancy issues have necessitated the use of feature selection across multiple domains. However, a common concern in feature selection is that different approaches can give very different results when applied to similar datasets. Aggregating the results of different selection methods helps to resolve this concern and control the diversity of selected feature subsets. In this work, we implemented a general framework for the ensemble of multiple feature selection methods. Based on diversified datasets generated from the original set of observations, we aggregated the importance scores generated by multiple feature selection techniques using two methods: the Within Aggregation Method (WAM), which refers to aggregating importance scores within a single feature selection; and the Between Aggregation Method (BAM), which refers to aggregating importance scores between multiple feature selection methods. We applied the proposed framework on 13 real datasets with diverse performances and characteristics. The experimental evaluation showed that WAM provides an effective tool for determining the best feature selection method for a given dataset. WAM has also shown greater stability than BAM in terms of identifying important features. The computational demands of the two methods appeared to be comparable. The results of this work suggest that by applying both WAM and BAM, practitioners can gain a deeper understanding of the feature selection process.Keywords
Funding Information
- American University of Sharjah (000000000)
This publication has 25 references indexed in Scilit:
- A Bootstrap Based Neyman-Pearson Test for Identifying Variable ImportanceIEEE Transactions on Neural Networks and Learning Systems, 2014
- Metalearning: a survey of trends and technologiesArtificial Intelligence Review, 2013
- A review of feature selection methods on synthetic dataKnowledge and Information Systems, 2012
- Robust rank aggregation for gene list integration and meta-analysisBioinformatics, 2012
- LIBSVMACM Transactions on Intelligent Systems and Technology, 2011
- Robust biomarker identification for cancer diagnosis with ensemble feature selection methodsBioinformatics, 2009
- Stability of feature selection algorithms: a study on high-dimensional spacesKnowledge and Information Systems, 2006
- Data mining feature selection for credit scoring modelsJournal of the Operational Research Society, 2005
- ROCR: visualizing classifier performance in RBioinformatics, 2005
- Optimal number of features as a function of sample size for various classification rulesBioinformatics, 2004