Cryogenic electron tomography reveals herpesvirus capsid assembly intermediates inside the cell nucleus
Open Access
- 25 February 2026
- journal article
- research article
- Published by Springer Nature in Nature Communications
- Vol. 17 (1)
Abstract
Herpesviruses encapsulate their double-stranded DNA (dsDNA) genomes within an icosahedral nucleocapsid formed in the infected cell nucleus. Four biochemically purified nucleocapsids have been characterized, but their roles in herpesvirus replication remain controversial. The status of the capsid vertex-specific component (CVSC), essential for capsid stability and dsDNA packaging and retention, is also unclear. By integrating cryogenic focused ion beam milling with electron tomography and subtomogram averaging, we derive atomic models for all protein components, including the CVSC, across different herpesvirus capsid types within infected cell nuclei. Focused classification of pentonal vertex densities reveal differences in CVSC occupancy between genome-filled capsids and capsids lacking dsDNA, highlight structural heterogeneity and providing insight into distinct capsid assembly stages in situ. These intra-nuclear findings redefine the maturation model of herpesvirus capsid assembly, advancing the understanding of herpesvirus replication, and demonstrate the effectiveness of in situ electron imaging by studying virus assembly within host cells.Keywords
Funding Information
- National Institute of Allergy and Infectious Diseases (R01AI020459)
- National Institute of Allergy and Infectious Diseases (R21AI159375)
- National Institute of Allergy and Infectious Diseases (R21AI159375)
- National Institute of Allergy and Infectious Diseases (AI15937502)
- National Institute of General Medical Sciences (R01GM150905)
- National Institute of Mental Health (R21MH125285)
This publication has 107 references indexed in Scilit:
- UCSF ChimeraX: Structure visualization for researchers, educators, and developersProtein Science, 2020
- DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHVCell, 2019
- Herpesvirus Capsid Assembly and DNA Packaging2017
- Procapsid Assembly, Maturation, Nuclear Exit: Dynamic Steps in the Production of Infectious Herpesvirions2011
- Therapy of Herpes Virus Infections in Children2008
- Dual-Axis Tomography: An Approach with Alignment Methods That Preserve ResolutionJournal of Structural Biology, 1997
- Assembly of the Herpes Simplex Virus Capsid: Characterization of Intermediates Observed During Cell-free Capsid FormationJournal of Molecular Biology, 1996
- VMD: Visual molecular dynamicsJournal of Molecular Graphics, 1996
- Computer Visualization of Three-Dimensional Image Data Using IMODJournal of Structural Biology, 1996
- Three‐Dimensional reconstruction of single particles from random and nonrandom tilt seriesJournal of Electron Microscopy Technique, 1988