A customizable software for fast reduction and analysis of large X-ray scattering data sets: applications of the newDPDAKpackage to small-angle X-ray scattering and grazing-incidence small-angle X-ray scattering
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Open Access
- 30 September 2014
- journal article
- review article
- Published by International Union of Crystallography (IUCr) in Journal of Applied Crystallography
- Vol. 47 (5) , 1797-1803
Abstract
X-ray scattering experiments at synchrotron sources are characterized by large and constantly increasing amounts of data. The great number of files generated during a synchrotron experiment is often a limiting factor in the analysis of the data, since appropriate software is rarely available to perform fast and tailored data processing. Furthermore, it is often necessary to perform online data reduction and analysis during the experiment in order to interactively optimize experimental design. This article presents an open-source software package developed to process large amounts of data from synchrotron scattering experiments. These data reduction processes involve calibration and correction of raw data, one- or two-dimensional integration, as well as fitting and further analysis of the data, including the extraction of certain parameters. The software,DPDAK(directly programmable data analysis kit), is based on a plug-in structure and allows individual extension in accordance with the requirements of the user. The article demonstrates the use ofDPDAKfor on- and offline analysis of scanning small-angle X-ray scattering (SAXS) data on biological samples and microfluidic systems, as well as for a comprehensive analysis of grazing-incidence SAXS data. In addition to a comparison with existing software packages, the structure ofDPDAKand the possibilities and limitations are discussed.Keywords
This publication has 33 references indexed in Scilit:
- P03, the microfocus and nanofocus X-ray scattering (MiNaXS) beamline of the PETRA III storage ring: the microfocus endstationJournal of Synchrotron Radiation, 2012
- Improved count rate corrections for highest data quality with PILATUS detectorsJournal of Synchrotron Radiation, 2012
- MAXIPIX, a fast readout photon-counting X-ray area detector for synchrotron applicationsJournal of Instrumentation, 2011
- Scatter: software for the analysis of nano- and mesoscale small-angle scatteringJournal of Applied Crystallography, 2010
- High brilliance small-angle X-ray scattering applied to soft matterCurrent Opinion in Colloid & Interface Science, 2009
- BioXTAS RAW, a software program for high-throughput automated small-angle X-ray scattering data reduction and preliminary analysisJournal of Applied Crystallography, 2009
- Strain Dependent Structural Changes of Spider Dragline SilkMacromolecules, 2007
- Time Resolved Collapse of a Folding Protein Observed with Small Angle X-Ray ScatteringPhysical Review Letters, 2001
- Two-dimensional detector software: From real detector to idealised image or two-theta scanHigh Pressure Research, 1996
- Small-angle scattering from porous amorphous substancesJournal of Applied Crystallography, 1991