fastnb: A high-performance C++ Naive Bayes classifier for SILVA-based 16S rRNA taxonomy
Authors:
- Marcin NawalnyMNMarcin Nawalny
- Bartosz ŚwiderskiBŚBartosz Świderski
- Monika PizonMPMonika Pizon
- Jakub BednarekJBJakub Bednarek
- Jarosław KurekJarosław Kurek
Open Access
Abstract
No abstract availableThis publication has 19 references indexed in Scilit:
- Greengenes2 unifies microbial data in a single reference treeNature Biotechnology, 2023
- GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomyNucleic Acids Research, 2021
- Benchmarking Metagenomics Tools for Taxonomic ClassificationCell, 2019
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2Nature Biotechnology, 2019
- Minimap2: pairwise alignment for nucleotide sequencesBioinformatics, 2018
- A communal catalogue reveals Earth’s multiscale microbial diversityNature, 2017
- Deep feature weighting for naive Bayes and its application to text classificationEngineering Applications of Artificial Intelligence, 2016
- DADA2: High-resolution sample inference from Illumina amplicon dataNature Methods, 2016
- Structure extended multinomial naive BayesInformation Sciences, 2016
- The SILVA ribosomal RNA gene database project: improved data processing and web-based toolsNucleic Acids Research, 2012