The complete chloroplast genome of Ranunculus Cantoniensis
Authors:
Open Access
- 2 January 2019
- journal article
- research article
- Published by Taylor & Francis in Mitochondrial DNA Part B
- Vol. 4 (1) , 1095-1096
Abstract
The complete chloroplast genome of Ranunculus cantoniensis was determined. Total chloroplast genome was 155,119 bp in lenth, displayed a typical quadripartite structure, including a large single copy (LSC) region of 84,634 bp and a small single copy region (SSC) of 18,879 bp, separated by a pair of inverted repeats (IRs) of 25,803 bp. A total of 131 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes were indentified. Among them, 15 genes have one intron each and 3 genes contain two introns. The overall GC content was 37.9%, while the corresponding values of LSC, SSC, and IR regions were 36.0, 31.1, and 43.5%, respectively. Phylogenetic relationship analysis showed that R. cantoniensis was closely related to R. macranthus.Keywords
Funding Information
- National Natural Science Foundation of China
This publication has 8 references indexed in Scilit:
- Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus SpeciesFrontiers in Plant Science, 2016
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics, 2014
- Patterns of hybridization in a multispecies hybrid zone in theRanunculus cantoniensiscomplex (Ranunculaceae)Botanical Journal of the Linnean Society, 2014
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityMolecular Biology and Evolution, 2013
- Reticulate evolution in Ranunculus cantonensis polyploid complex and its allied speciesPlant Systematics and Evolution, 2013
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assemblerGigaScience, 2012
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence dataBioinformatics, 2012
- Phylogenetic relationships and evolutionary traits in Ranunculus s.l. (Ranunculaceae) inferred from ITS sequence analysisMolecular Phylogenetics and Evolution, 2005