The Assimilative Canadian High Arctic Ionospheric Model (A-CHAIM) is a data assimilation model of the high latitude ionosphere, incorporating measurements from many instruments, including slant Total Electron Content measurements from ground-based Global Navigation Satellite System (GNSS) receivers. These measurements have receiver-specific Differential Code Biases (DCB) which must be resolved to produce an absolute measurement, which are resolved along with the ionospheric state using Rao-Blackwellized particle filtering. These DCBs are compared to published values and to DCBs determined using 8 different Global Ionospheric Maps (GIM), which show small but consistent systematic differences. The potential cause of these systematic biases is investigated using multiple experimental A-CHAIM test runs, including the effect of plasmaspheric electron content. By running tests using the GIM-derived DCBs, it is shown that using A-CHAIM DCBs produces the lowest overall error, and that using GIM DCBs causes an overestimation of the topside electron density which can exceed 100% when compared to in-situ measurements from DMSP.