Automated Machine Learning for Healthcare and Clinical Notes Analysis
Open Access
Abstract
Machine learning (ML) has been slowly entering every aspect of our lives and its positive impact has been astonishing. To accelerate embedding ML in more applications and incorporating it in real-world scenarios, automated machine learning (AutoML) is emerging. The main purpose of AutoML is to provide seamless integration of ML in various industries, which will facilitate better outcomes in everyday tasks. In healthcare, AutoML has been already applied to easier settings with structured data such as tabular lab data. However, there is still a need for applying AutoML for interpreting medical text, which is being generated at a tremendous rate. For this to happen, a promising method is AutoML for clinical notes analysis, which is an unexplored research area representing a gap in ML research. The main objective of this paper is to fill this gap and provide a comprehensive survey and analytical study towards AutoML for clinical notes. To that end, we first introduce the AutoML technology and review its various tools and techniques. We then survey the literature of AutoML in the healthcare industry and discuss the developments specific to clinical settings, as well as those using general AutoML tools for healthcare applications. With this background, we then discuss challenges of working with clinical notes and highlight the benefits of developing AutoML for medical notes processing. Next, we survey relevant ML research for clinical notes and analyze the literature and the field of AutoML in the healthcare industry. Furthermore, we propose future research directions and shed light on the challenges and opportunities this emerging field holds. With this, we aim to assist the community with the implementation of an AutoML platform for medical notes, which if realized can revolutionize patient outcomes.Keywords
This publication has 100 references indexed in Scilit:
- A Review of Feature Reduction Techniques in NeuroimagingNeuroinformatics, 2013
- Drug side effect extraction from clinical narratives of psychiatry and psychology patientsJournal of the American Medical Informatics Association, 2011
- Using machine learning for concept extraction on clinical documents from multiple data sourcesJournal of the American Medical Informatics Association, 2011
- Natural Language Processing methods and systems for biomedical ontology learningJournal of Biomedical Informatics, 2011
- Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial diseaseJournal of the American Medical Informatics Association, 2010
- Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applicationsJournal of the American Medical Informatics Association, 2010
- Recognizing Obesity and Comorbidities in Sparse DataJournal of the American Medical Informatics Association, 2009
- Automatic construction of rule-based ICD-9-CM coding systemsBMC Bioinformatics, 2008
- Management Support with Structured and Unstructured Data—An Integrated Business Intelligence FrameworkInformation Systems Management, 2008
- Natural language processing to extract medical problems from electronic clinical documents: Performance evaluationJournal of Biomedical Informatics, 2006