Roles of Puf proteins in mRNA degradation and translation
Authors:
Abstract
Puf proteins are regulators of diverse eukaryotic processes including stem cell maintenance, organelle biogenesis, oogenesis, neuron function, and memory formation. At the molecular level, Puf proteins promote translational repression and/or degradation of target mRNAs by first interacting with conservedcis‐elements in the 3′ untranslated region (UTR). Once bound to an mRNA, Puf proteins elicit RNA repression by complex interactions with protein cofactors and regulatory machinery involved in translation and degradation. Recent work has dramatically increased our understanding of the targets of Puf protein regulation, as well as the mechanisms by which Puf proteins recognize and regulate those mRNA targets. Crystal structure analysis of several Puf–RNA complexes has demonstrated that while Puf proteins are extremely conserved in their RNA‐binding domains, Pufs attain target specificity by utilizing different structural conformations to recognize 8–10 nt sequences. Puf proteins have also evolved modes of protein interactions that are organism and transcript‐specific, yet two common mechanisms of repression have emerged: inhibition of cap‐binding events to block translation initiation, and recruitment of the CCR4–POP2–NOT deadenylase complex for poly(A) tail removal. Finally, multiple schemes to regulate Puf protein activity have been identified, including post‐translational mechanisms that allow rapid changes in the repression of mRNA targets.WIREs RNA2011 2 471–492 DOI: 10.1002/wrna.69This article is categorized under: RNA Interactions with Proteins and Other Molecules > Protein–RNA Recognition Translation > Translation Regulation RNA Turnover and Surveillance > Regulation of RNA StabilityKeywords
This publication has 123 references indexed in Scilit:
- PUF3 Acceleration of Deadenylation in Vivo Can Operate Independently of CCR4 Activity, Possibly Involving Effects on the PAB1–mRNP StructureJournal of Molecular Biology, 2010
- The trypanosome Pumilio‐domain protein PUF7 associates with a nuclear cyclophilin and is involved in ribosomal RNA maturationFEBS Letters, 2010
- Mef2‐mediated transcription of the miR379–410 cluster regulates activity‐dependent dendritogenesis by fine‐tuning Pumilio2 protein levelsThe EMBO Journal, 2009
- C. elegans RNA-binding proteins PUF-8 and MEX-3 function redundantly to promote germline stem cell mitosisDevelopmental Biology, 2009
- Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4pNature Structural & Molecular Biology, 2008
- RNA regulons: coordination of post-transcriptional eventsNature Reviews Genetics, 2007
- The Caenorhabditis elegans pumilio homolog, puf-9, is required for the 3′UTR-mediated repression of the let-7 microRNA target gene, hbl-1Developmental Biology, 2007
- Cap-Dependent Translational Inhibition Establishes Two Opposing Morphogen Gradients in Drosophila EmbryosCurrent Biology, 2006
- Engineering RNA sequence specificity of Pumilio repeatsProceedings of the National Academy of Sciences, 2006
- A conserved RNA-binding protein controls germline stem cells in Caenorhabditis elegansNature, 2002