Reference genome of the ant Lasius platythorax
Authors:
- Barbara FeldmeyerBFBarbara Feldmeyer
- Nadège GuiglielmoniNGNadège Guiglielmoni
- Joseph KirangwaJKJoseph Kirangwa
- Florian MenzelFMFlorian Menzel
- Judit Salces-OrtizJSJudit Salces-Ortiz
- Rosa FernándezRFRosa Fernández
- Elena Buena AtienzaEAElena Buena Atienza
- Claudio CiofiCCClaudio Ciofi
- Maria Angela DiromaMDMaria Angela Diroma
- Alessio IannucciAIAlessio Iannucci
- Chiara NataliCNChiara Natali
- Ann M. Mc CartneyACAnn M. Mc Cartney
Preprint
Abstract
Ants are a highly diversified insect family of the order Hymenoptera, with many fascinating characteristics such as eusociality, chemical communication, farming, or social parasitism. Moreover, ants frequent a wide variety of habitats from dry deserts, grasslands, and savannas to cold temperate forests. The ability of ants to inhabit such diverse habitat ranges demonstrates their adaptability and ecological resilience. However, little is known about the genetic underpinnings of this vast array of traits and their adaptive potential. Here, we generated a high-quality genome assembly for the ant species Lasius platythorax using long-read PacBio HiFi in combination with chromatin conformation capture (Hi-C) sequencing. We successfully assembled the genome into 15 chromosome-level scaffolds ranging from 7.9 to 19.2 Mb and encompassing 204.6 Mb out of 235.3 Mb (total assembly), and a BUSCO score of 86% (Hymenoptera_odb10). Comparative genomics between the two sister species will provide insights into the genomic basis of trait differentiation.Keywords
This publication has 35 references indexed in Scilit:
- Fast gapped-read alignment with Bowtie 2Nature Methods, 2012
- Hydrocarbons in the Ant Lasius niger: From the Cuticle to the Nest and Home Range MarkingJournal of Chemical Ecology, 2009
- Using RepeatMasker to Identify Repetitive Elements in Genomic SequencesCurrent Protocols in Bioinformatics, 2009
- The Evolution of Invasiveness in Garden AntsPLOS ONE, 2008
- A DNA and morphology based phylogenetic framework of the ant genus Lasius with hypotheses for the evolution of social parasitism and fungicultureBMC Ecology and Evolution, 2008
- Specificity and transmission mosaic of ant nest-wall fungiProceedings of the National Academy of Sciences, 2008
- The Evolution of Agriculture in InsectsAnnual Review of Ecology, Evolution, and Systematics, 2005
- Mellein, a Trail Pheromone Component of the Ant Lasius fuliginosusJournal of Chemical Ecology, 1997
- Basic local alignment search toolJournal of Molecular Biology, 1990
- Der Kartonnestbau bei Lasius fuliginosus Latr. (Hym. Formicidae)Journal of Comparative Physiology A, 1970