A Survey of Flexible Protein Binding Mechanisms and their Transition States Using Native Topology Based Energy Landscapes
Authors:
- Yaakov LevyYLYaakov Levy
- Samuel S. ChoSCSamuel S. Cho
- José N. OnuchicJOJosé N. Onuchic
- Peter G. WolynesPWPeter G. Wolynes
- 1 March 2005
- journal article
- Published by Elsevier in Journal of Molecular Biology
- Vol. 346 (4) , 1121-1145
Abstract
No abstract availableKeywords
This publication has 114 references indexed in Scilit:
- Dimerization of the p53 Oligomerization Domain: Identification of a Folding Nucleus by Molecular Dynamics SimulationsJournal of Molecular Biology, 2005
- Secondary Structure Switching in Cro Protein EvolutionStructure, 2004
- Coupled folding–binding versus docking: A lattice model studyThe Journal of Chemical Physics, 2004
- Analysing Six Types of Protein–Protein InterfacesJournal of Molecular Biology, 2003
- Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometryNature, 2002
- Functional organization of the yeast proteome by systematic analysis of protein complexesNature, 2002
- Why are proteins so robust to site mutations?Journal of Molecular Biology, 2002
- Role of explicitly cooperative interactions in protein folding funnels: A simulation studyThe Journal of Chemical Physics, 2001
- Thermodynamics of trimer-of-hairpins formation by the SIV gp41 envelope proteinJournal of Molecular Biology, 2001
- Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteinsJournal of Molecular Biology, 2000