Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution
Open Access
- 21 April 2015
- journal article
- research article
- Published by Oxford University Press (OUP) in Genome Biology and Evolution
- Vol. 7 (5) , 1280-1295
Abstract
The increasing availability of genomic information from the Arthropoda continues to revolutionize our understanding of the biology of this most diverse animal phylum. However, our sampling of arthropod diversity remains uneven, and key clade such as the Myriapoda are severely underrepresented. Here we present the genome of the cosmopolitanly distributed Rusty Millipede Trigoniulus corallinus, which represents the first diplopod genome to be published, and the second example from the Myriapoda as a whole. This genomic resource contains the majority of core eukaryotic genes (94.3%), and key transcription factor classes that were thought to be lost in the Ecdysozoa. Mitochondrial genome and gene family (transcription factor, Dscam, circadian clock-driving protein, odorant receptor cassette, bioactive compound, and cuticular protein) analyses were also carried out to shed light on their states in the Diplopoda and Myriapoda. The ready availability of T. corallinus recommends it as a new model for evolutionary developmental biology, and the data set described here will be of widespread utility in investigating myriapod and arthropod genomics and evolution.Keywords
This publication has 66 references indexed in Scilit:
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityMolecular Biology and Evolution, 2013
- Fast gapped-read alignment with Bowtie 2Nature Methods, 2012
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0Systematic Biology, 2010
- Structural cuticular proteins from arthropods: Annotation, nomenclature, and sequence characteristics in the genomics eraInsect Biochemistry and Molecular Biology, 2010
- A Drosophila Protein Family Implicated in Pheromone Perception Is Related to Tay-Sachs GM2-Activator ProteinJournal of Biological Chemistry, 2009
- Assessing the gene space in draft genomesNucleic Acids Research, 2008
- The complete mitochondrial genome of Symphylella sp. (Myriapoda: Symphyla): Extensive gene order rearrangement and evidence in favor of ProgoneataMolecular Phylogenetics and Evolution, 2008
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphsGenome Research, 2008
- Clustal W and Clustal X version 2.0Bioinformatics, 2007
- tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic SequenceNucleic Acids Research, 1997