The pollen virome of wild plants and its association with variation in floral traits and land use
Open Access
- 26 January 2022
- journal article
- research article
- Published by Springer Nature in Nature Communications
- Vol. 13 (1) , 1-11
Abstract
Pollen is a unique vehicle for viral spread. Pollen-associated viruses hitchhike on or within pollen grains and are transported to other plants by pollinators. They are deposited on flowers and have a direct pathway into the plant and next generation via seeds. To discover the diversity of pollen-associated viruses and identify contributing landscape and floral features, we perform a species-level metagenomic survey of pollen from wild, visually asymptomatic plants, located in one of four regions in the United States of America varying in land use. We identify many known and novel pollen-associated viruses, half belonging to the Bromoviridae, Partitiviridae, and Secoviridae viral families, but many families are represented. Across the regions, species harbor more viruses when surrounded by less natural and more human-modified environments than the reverse, but we note that other region-level differences may also covary with this. When examining the novel connection between virus richness and floral traits, we find that species with multiple, bilaterally symmetric flowers and smaller, spikier pollen harbored more viruses than those with opposite traits. The association of viral diversity with floral traits highlights the need to incorporate plant-pollinator interactions as a driver of pollen-associated virus transport into the study of plant-viral interactions.Keywords
Funding Information
- Leasure K. Darbaker Prize in Botany (University of Pittsburgh Pymatuning Laboratory of Ecology); Andrew Mellon Predoctoral Fellowship
- Charles E. Kaufman Foundation of the Pittsburgh Foundation
This publication has 79 references indexed in Scilit:
- Fast gapped-read alignment with Bowtie 2Nature Methods, 2012
- Raw Sewage Harbors Diverse Viral PopulationsmBio, 2011
- RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing dataBioinformatics, 2011
- RNA Viruses in Hymenopteran Pollinators: Evidence of Inter-Taxa Virus Transmission via Pollen and Potential Impact on Non-Apis Hymenopteran SpeciesPLOS ONE, 2010
- ViralZone: a knowledge resource to understand virus diversityNucleic Acids Research, 2010
- Lifestyles of plant virusesPhilosophical Transactions of the Royal Society B: Biological Sciences, 2010
- The Sequence Alignment/Map format and SAMtoolsBioinformatics, 2009
- Plant virus emergence and evolution: Origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for controlVirus Research, 2009
- Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology driversTrends in Ecology & Evolution, 2004
- The rapid generation of mutation data matrices from protein sequencesBioinformatics, 1992