A DFT study of 2-aminopurine-containing dinucleotides: prediction of stacked conformations with B-DNA structure
- 11 May 2016
- journal article
- research article
- Published by Royal Society of Chemistry (RSC) in Physical Chemistry Chemical Physics
- Vol. 18 (21) , 14691-14700
Abstract
DFT calculations predict base-stacked and base-flipped structures of 2-aminopurine-containing DNA dinucleotides.Keywords
Funding Information
- Engineering and Physical Sciences Research Council (DTP)
This publication has 64 references indexed in Scilit:
- 2-aminopurine as a fluorescent probe of DNA conformation and the DNA–enzyme interfaceQuarterly Reviews of Biophysics, 2015
- Branchpoint Expansion in a Fully Complementary Three-Way DNA JunctionJournal of the American Chemical Society, 2012
- Site-Specific Dynamics in TAT Triplex DNA As Revealed by Time-Domain Fluorescence of 2-AminopurineThe Journal of Physical Chemistry B, 2009
- DNA conformations and their sequence preferencesNucleic Acids Research, 2008
- Probing dynamics of HIV-1 nucleocapsid protein/target hexanucleotide complexes by 2-aminopurineNucleic Acids Research, 2007
- Site-Specific Dynamics of Strands in ss- and dsDNA As Revealed by Time-Domain Fluorescence of 2-AminopurineThe Journal of Physical Chemistry B, 2007
- Influence of Base Dynamics on the Conformational Properties of DNA: Observation of Static Conformational States in Rigid Duplexes at 77 KJournal of the American Chemical Society, 2006
- Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexesNucleic Acids Research, 2005
- Evidence of Tautomerism in 2-Aminopurine from Fluorescence Lifetime MeasurementsThe Journal of Physical Chemistry B, 2004
- A standard reference frame for the description of nucleic acid base-pair geometryJournal of Molecular Biology, 2001