Nprl3 is required for normal development of the cardiovascular system
- 27 April 2012
- journal article
- research article
- Published by Springer Nature in Mammalian Genome
- Vol. 23 (7-8) , 404-415
Abstract
C16orf35 is a conserved and widely expressed gene lying adjacent to the human α-globin cluster in all vertebrate species. In-depth sequence analysis shows that C16orf35 (now called NPRL3) is an orthologue of the yeast gene Npr3 (nitrogen permease regulator 3) and, furthermore, is a paralogue of its protein partner Npr2. The yeast Npr2/3 dimeric protein complex senses amino acid starvation and appropriately adjusts cell metabolism via the TOR pathway. Here we have analysed a mouse model in which expression of Nprl3 has been abolished using homologous recombination. The predominant effect on RNA expression appears to involve genes that regulate protein synthesis and cell cycle, consistent with perturbation of the mTOR pathway. Embryos homozygous for this mutation die towards the end of gestation with a range of cardiovascular defects, including outflow tract abnormalities and ventriculoseptal defects consistent with previous observations, showing that perturbation of the mTOR pathway may affect development of the myocardium. NPRL3 is a candidate gene for harbouring mutations in individuals with developmental abnormalities of the cardiovascular system.Keywords
This publication has 46 references indexed in Scilit:
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationNature Biotechnology, 2010
- Adventitious changes in long-range gene expression caused by polymorphic structural variation and promoter competitionProceedings of the National Academy of Sciences, 2009
- The Pfam protein families databaseNucleic Acids Research, 2009
- The Gene Ontology in 2010: extensions and refinementsNucleic Acids Research, 2009
- TopHat: discovering splice junctions with RNA-SeqBioinformatics, 2009
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesNature Protocols, 2008
- VACTERL/caudal regression/Currarino syndrome-like malformations in mice with mutation in the proprotein convertasePcsk5Genes & Development, 2008
- Mapping and quantifying mammalian transcriptomes by RNA-SeqNature Methods, 2008
- T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. ThorntonJournal of Molecular Biology, 2000
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997