α-Synuclein Tertiary Contact Dynamics

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Abstract
Tertiary contact formation rates in α-synuclein, an intrinsically disordered polypeptide implicated in Parkinson's disease, have been determined from measurements of diffusion-limited electron-transfer kinetics between triplet-excited tryptophan:3-nitrotyrosine pairs separated by 10, 12, 55, and 90 residues. Calculations based on a Markovian lattice model developed to describe intrachain diffusion dynamics for a disordered polypeptide give contact quenching rates for various loop sizes ranging from 6 to 48 that are in reasonable agreement with experimentally determined values for small loops (10−20 residues). Contrary to expectations, measured contact rates in α-synuclein do not continue to decrease as the loop size increases (≥35 residues), and substantial deviations from calculated rates are found for the pairs W4−Y94, Y39−W94, and W4−Y136. The contact rates for these large loops indicate much shorter average donor−acceptor separations than expected for a random polymer.

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